Biomedical Data Science Facility

The Innovation Centre Biomedical Data Science Facility provides support for researchers from the generation, interpretation, and analysis of biological data sets through to the development of automated analysis pipelines.

Biology and medical sciences are progressively becoming data intensive through the complexity and size of data sets from both genomic analysis and high throughput instrumentation like those found within the Innovation Centre. These now require the development of automated pipelines and software, to extract the data researchers require to solve complex biological problems.

Biomedical Data Science Facility Services

• Development of software, scripts, and visualization tools to automate analysis of multi-omics, high-throughput and bioimaging data
• Development of image analysis software to extract quantitative data from bioimages
• Scientific and high-performance (HPC) computing software development
• Genomic analysis
  • Bulk (mi)RNA-Seq (differential expression, functional enrichments)
  • DNA-Seq (whole exome, whole genome)
  • Chip-Seq (peak calling, motif enrichment)
  • Single Cell RNA-Seq (cell type clustering, pseudotime analysis, differential expression, functional enrichment)
• Customised hands-on training on all developed software
• Fee for service

Enquiries

Dr David Humphreys
Senior Research Scientist, Biomedical Data Sciences Facility
d.humphreys@victorchang.edu.au

Dr Satya Arjunan
Scientific Software Engineer, Biomedical Data Sciences Facility
s.arjunan@victorchang.edu.au

Paul Young
Senior Research Officer, Biomedical Data Sciences Facility
p.young@victorchang.edu.au

Jess Farr
Scientific Software Engineer, Biomedical Data Sciences Facility
j.farr@victorchang.edu.au